UCSC Genomic Data · JSON-LD Context

Ucsc Genomic Data Context

JSON-LD context defining the semantic vocabulary for Ucsc Genomic Data from UCSC Genomic Data.

5 Classes 16 Properties 5 Namespaces
View Context View on GitHub

Namespaces

schema: https://schema.org/
ucsc: https://genome.ucsc.edu/vocab/
bioschemas: https://bioschemas.org/
xsd: http://www.w3.org/2001/XMLSchema#
so: http://purl.obolibrary.org/obo/SO_

Classes

GenomeAssembly Track SequenceRegion Chromosome TrackHub

Properties

Property Type Container
name string
description string
organism string
scientificName string
taxId integer
track string
shortLabel string
longLabel string
type string
visibility string
genome string
chrom string
start integer
end integer
dna string
hubUrl reference

JSON-LD Document

Raw ↑ 
{
  "@context": {
    "@version": 1.1,
    "schema": "https://schema.org/",
    "ucsc": "https://genome.ucsc.edu/vocab/",
    "bioschemas": "https://bioschemas.org/",
    "xsd": "http://www.w3.org/2001/XMLSchema#",
    "so": "http://purl.obolibrary.org/obo/SO_",

    "GenomeAssembly": "bioschemas:Taxon",
    "Track": "ucsc:Track",
    "SequenceRegion": "so:0001411",
    "Chromosome": "so:0000340",
    "TrackHub": "ucsc:TrackHub",

    "name": { "@id": "schema:name", "@type": "xsd:string" },
    "description": { "@id": "schema:description", "@type": "xsd:string" },
    "organism": { "@id": "bioschemas:taxonRank", "@type": "xsd:string" },
    "scientificName": { "@id": "schema:scientificName", "@type": "xsd:string" },
    "taxId": { "@id": "bioschemas:taxonomicRange", "@type": "xsd:integer" },

    "track": { "@id": "schema:identifier", "@type": "xsd:string" },
    "shortLabel": { "@id": "schema:alternateName", "@type": "xsd:string" },
    "longLabel": { "@id": "schema:name", "@type": "xsd:string" },
    "type": { "@id": "schema:additionalType", "@type": "xsd:string" },
    "visibility": { "@id": "ucsc:visibility", "@type": "xsd:string" },

    "genome": { "@id": "ucsc:assembly", "@type": "xsd:string" },
    "chrom": { "@id": "ucsc:chromosome", "@type": "xsd:string" },
    "start": { "@id": "ucsc:startPosition", "@type": "xsd:integer" },
    "end": { "@id": "ucsc:endPosition", "@type": "xsd:integer" },
    "dna": { "@id": "ucsc:dnaSequence", "@type": "xsd:string" },

    "hubUrl": { "@id": "schema:url", "@type": "@id" }
  }
}