STRING · JSON-LD Context
context Context
JSON-LD context defining the semantic vocabulary for context from STRING.
0 Classes
38 Properties
8 Namespaces
Namespaces
schema:
https://schema.org/
bioschemas:
https://bioschemas.org/
string:
https://string-db.org/vocab/
ncbi:
https://www.ncbi.nlm.nih.gov/taxonomy/
go:
http://purl.obolibrary.org/obo/GO_
kegg:
https://www.kegg.jp/entry/
uniprot:
https://www.uniprot.org/uniprot/
xsd:
http://www.w3.org/2001/XMLSchema#
Properties
| Property | Type | Container |
|---|---|---|
| Interaction | reference | |
| ProteinMapping | reference | |
| EnrichmentResult | reference | |
| stringId | string | |
| stringId_A | string | |
| stringId_B | string | |
| preferredName | ||
| preferredName_A | ||
| preferredName_B | ||
| annotation | ||
| ncbiTaxonId | integer | |
| taxonName | ||
| score | decimal | |
| nscore | decimal | |
| fscore | decimal | |
| pscore | decimal | |
| ascore | decimal | |
| escore | decimal | |
| dscore | decimal | |
| tscore | decimal | |
| category | ||
| term | ||
| description | ||
| number_of_genes | integer | |
| number_of_genes_in_background | integer | |
| p_value | decimal | |
| fdr | decimal | |
| inputGenes | ||
| preferredNames | ||
| bitscore | decimal | |
| identity | decimal | |
| number_of_nodes | integer | |
| number_of_edges | integer | |
| expected_number_of_edges | decimal | |
| average_node_degree | decimal | |
| local_clustering_coefficient | decimal | |
| string_version | ||
| stable_address | reference |
JSON-LD Document
{
"@context": {
"@version": 1.1,
"schema": "https://schema.org/",
"bioschemas": "https://bioschemas.org/",
"string": "https://string-db.org/vocab/",
"ncbi": "https://www.ncbi.nlm.nih.gov/taxonomy/",
"go": "http://purl.obolibrary.org/obo/GO_",
"kegg": "https://www.kegg.jp/entry/",
"uniprot": "https://www.uniprot.org/uniprot/",
"Interaction": {
"@id": "bioschemas:Protein",
"@type": "@id"
},
"ProteinMapping": {
"@id": "bioschemas:Protein",
"@type": "@id"
},
"EnrichmentResult": {
"@id": "string:EnrichmentResult",
"@type": "@id"
},
"stringId": {
"@id": "string:stringId",
"@type": "xsd:string"
},
"stringId_A": {
"@id": "string:interactorA",
"@type": "xsd:string"
},
"stringId_B": {
"@id": "string:interactorB",
"@type": "xsd:string"
},
"preferredName": {
"@id": "schema:name"
},
"preferredName_A": {
"@id": "string:preferredNameA"
},
"preferredName_B": {
"@id": "string:preferredNameB"
},
"annotation": {
"@id": "schema:description"
},
"ncbiTaxonId": {
"@id": "string:ncbiTaxonId",
"@type": "xsd:integer"
},
"taxonName": {
"@id": "schema:taxonRank"
},
"score": {
"@id": "string:combinedScore",
"@type": "xsd:decimal"
},
"nscore": {
"@id": "string:neighborhoodScore",
"@type": "xsd:decimal"
},
"fscore": {
"@id": "string:fusionScore",
"@type": "xsd:decimal"
},
"pscore": {
"@id": "string:phylogeneticScore",
"@type": "xsd:decimal"
},
"ascore": {
"@id": "string:coexpressionScore",
"@type": "xsd:decimal"
},
"escore": {
"@id": "string:experimentalScore",
"@type": "xsd:decimal"
},
"dscore": {
"@id": "string:databaseScore",
"@type": "xsd:decimal"
},
"tscore": {
"@id": "string:textminingScore",
"@type": "xsd:decimal"
},
"category": {
"@id": "string:annotationCategory"
},
"term": {
"@id": "string:functionalTerm"
},
"description": {
"@id": "schema:description"
},
"number_of_genes": {
"@id": "string:numberOfGenes",
"@type": "xsd:integer"
},
"number_of_genes_in_background": {
"@id": "string:numberOfGenesInBackground",
"@type": "xsd:integer"
},
"p_value": {
"@id": "string:pValue",
"@type": "xsd:decimal"
},
"fdr": {
"@id": "string:falsDiscoveryRate",
"@type": "xsd:decimal"
},
"inputGenes": {
"@id": "string:inputGenes"
},
"preferredNames": {
"@id": "string:preferredNames"
},
"bitscore": {
"@id": "string:smithWatermanBitscore",
"@type": "xsd:decimal"
},
"identity": {
"@id": "string:sequenceIdentity",
"@type": "xsd:decimal"
},
"number_of_nodes": {
"@id": "string:numberOfNodes",
"@type": "xsd:integer"
},
"number_of_edges": {
"@id": "string:numberOfEdges",
"@type": "xsd:integer"
},
"expected_number_of_edges": {
"@id": "string:expectedNumberOfEdges",
"@type": "xsd:decimal"
},
"average_node_degree": {
"@id": "string:averageNodeDegree",
"@type": "xsd:decimal"
},
"local_clustering_coefficient": {
"@id": "string:localClusteringCoefficient",
"@type": "xsd:decimal"
},
"string_version": {
"@id": "schema:version"
},
"stable_address": {
"@id": "schema:url",
"@type": "@id"
},
"xsd": "http://www.w3.org/2001/XMLSchema#"
}
}