STRING · JSON-LD Context

context Context

JSON-LD context defining the semantic vocabulary for context from STRING.

0 Classes 38 Properties 8 Namespaces
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Namespaces

schema: https://schema.org/
bioschemas: https://bioschemas.org/
string: https://string-db.org/vocab/
ncbi: https://www.ncbi.nlm.nih.gov/taxonomy/
go: http://purl.obolibrary.org/obo/GO_
kegg: https://www.kegg.jp/entry/
uniprot: https://www.uniprot.org/uniprot/
xsd: http://www.w3.org/2001/XMLSchema#

Properties

Property Type Container
Interaction reference
ProteinMapping reference
EnrichmentResult reference
stringId string
stringId_A string
stringId_B string
preferredName
preferredName_A
preferredName_B
annotation
ncbiTaxonId integer
taxonName
score decimal
nscore decimal
fscore decimal
pscore decimal
ascore decimal
escore decimal
dscore decimal
tscore decimal
category
term
description
number_of_genes integer
number_of_genes_in_background integer
p_value decimal
fdr decimal
inputGenes
preferredNames
bitscore decimal
identity decimal
number_of_nodes integer
number_of_edges integer
expected_number_of_edges decimal
average_node_degree decimal
local_clustering_coefficient decimal
string_version
stable_address reference

JSON-LD Document

Raw ↑
{
  "@context": {
    "@version": 1.1,
    "schema": "https://schema.org/",
    "bioschemas": "https://bioschemas.org/",
    "string": "https://string-db.org/vocab/",
    "ncbi": "https://www.ncbi.nlm.nih.gov/taxonomy/",
    "go": "http://purl.obolibrary.org/obo/GO_",
    "kegg": "https://www.kegg.jp/entry/",
    "uniprot": "https://www.uniprot.org/uniprot/",

    "Interaction": {
      "@id": "bioschemas:Protein",
      "@type": "@id"
    },
    "ProteinMapping": {
      "@id": "bioschemas:Protein",
      "@type": "@id"
    },
    "EnrichmentResult": {
      "@id": "string:EnrichmentResult",
      "@type": "@id"
    },

    "stringId": {
      "@id": "string:stringId",
      "@type": "xsd:string"
    },
    "stringId_A": {
      "@id": "string:interactorA",
      "@type": "xsd:string"
    },
    "stringId_B": {
      "@id": "string:interactorB",
      "@type": "xsd:string"
    },
    "preferredName": {
      "@id": "schema:name"
    },
    "preferredName_A": {
      "@id": "string:preferredNameA"
    },
    "preferredName_B": {
      "@id": "string:preferredNameB"
    },
    "annotation": {
      "@id": "schema:description"
    },
    "ncbiTaxonId": {
      "@id": "string:ncbiTaxonId",
      "@type": "xsd:integer"
    },
    "taxonName": {
      "@id": "schema:taxonRank"
    },
    "score": {
      "@id": "string:combinedScore",
      "@type": "xsd:decimal"
    },
    "nscore": {
      "@id": "string:neighborhoodScore",
      "@type": "xsd:decimal"
    },
    "fscore": {
      "@id": "string:fusionScore",
      "@type": "xsd:decimal"
    },
    "pscore": {
      "@id": "string:phylogeneticScore",
      "@type": "xsd:decimal"
    },
    "ascore": {
      "@id": "string:coexpressionScore",
      "@type": "xsd:decimal"
    },
    "escore": {
      "@id": "string:experimentalScore",
      "@type": "xsd:decimal"
    },
    "dscore": {
      "@id": "string:databaseScore",
      "@type": "xsd:decimal"
    },
    "tscore": {
      "@id": "string:textminingScore",
      "@type": "xsd:decimal"
    },
    "category": {
      "@id": "string:annotationCategory"
    },
    "term": {
      "@id": "string:functionalTerm"
    },
    "description": {
      "@id": "schema:description"
    },
    "number_of_genes": {
      "@id": "string:numberOfGenes",
      "@type": "xsd:integer"
    },
    "number_of_genes_in_background": {
      "@id": "string:numberOfGenesInBackground",
      "@type": "xsd:integer"
    },
    "p_value": {
      "@id": "string:pValue",
      "@type": "xsd:decimal"
    },
    "fdr": {
      "@id": "string:falsDiscoveryRate",
      "@type": "xsd:decimal"
    },
    "inputGenes": {
      "@id": "string:inputGenes"
    },
    "preferredNames": {
      "@id": "string:preferredNames"
    },
    "bitscore": {
      "@id": "string:smithWatermanBitscore",
      "@type": "xsd:decimal"
    },
    "identity": {
      "@id": "string:sequenceIdentity",
      "@type": "xsd:decimal"
    },
    "number_of_nodes": {
      "@id": "string:numberOfNodes",
      "@type": "xsd:integer"
    },
    "number_of_edges": {
      "@id": "string:numberOfEdges",
      "@type": "xsd:integer"
    },
    "expected_number_of_edges": {
      "@id": "string:expectedNumberOfEdges",
      "@type": "xsd:decimal"
    },
    "average_node_degree": {
      "@id": "string:averageNodeDegree",
      "@type": "xsd:decimal"
    },
    "local_clustering_coefficient": {
      "@id": "string:localClusteringCoefficient",
      "@type": "xsd:decimal"
    },
    "string_version": {
      "@id": "schema:version"
    },
    "stable_address": {
      "@id": "schema:url",
      "@type": "@id"
    },
    "xsd": "http://www.w3.org/2001/XMLSchema#"
  }
}