Scispot · JSON-LD Context

Scispot Context

JSON-LD context defining the semantic vocabulary for Scispot from Scispot.

52 Classes 2 Properties 4 Namespaces

View Context View on GitHub

Namespaces

scispot: https://www.scispot.com/ontology/

sio: http://semanticscience.org/resource/

obo: http://purl.obolibrary.org/obo/

fhirObservation: https://www.hl7.org/fhir/observation.html

Classes

Labsheet LabsheetRow ElectronicLabNotebook NotebookEntry Manifest Sequence Sample Experiment labsheetId name description barcode columns column columnType columnRequired rows rowData rowCount sequenceType dnSequence rnaSequence proteinSequence sequenceString sequenceLength annotation annotationType annotationStart annotationEnd strand notebook notebookEntry entryType experiment protocol observation manifest manifestType plate box rack dimensions containerRows containerColumns apiKey workspace hl7MessageType astmProtocol labType biotechLab clinicalLab researchLab

Properties

Property	Type	Container
createdAt	schema:DateTime
updatedAt	schema:DateTime

JSON-LD Document

{
  "@context": {
    "@vocab": "https://schema.org/",
    "scispot": "https://www.scispot.com/ontology/",
    "sio": "http://semanticscience.org/resource/",
    "obo": "http://purl.obolibrary.org/obo/",

    "Labsheet": "scispot:Labsheet",
    "LabsheetRow": "scispot:LabsheetRow",
    "ElectronicLabNotebook": "scispot:ELN",
    "NotebookEntry": "scispot:NotebookEntry",
    "Manifest": "scispot:Manifest",
    "Sequence": "scispot:Sequence",
    "Sample": "sio:SIO_000123",
    "Experiment": "sio:SIO_000070",

    "labsheetId": "schema:identifier",
    "name": "schema:name",
    "description": "schema:description",
    "barcode": "schema:identifier",
    "createdAt": {
      "@id": "schema:dateCreated",
      "@type": "schema:DateTime"
    },
    "updatedAt": {
      "@id": "schema:dateModified",
      "@type": "schema:DateTime"
    },

    "columns": "scispot:hasColumn",
    "column": "scispot:Column",
    "columnType": "scispot:columnDataType",
    "columnRequired": "scispot:required",

    "rows": "scispot:hasRow",
    "rowData": "scispot:rowData",
    "rowCount": "schema:numberOfItems",

    "sequenceType": "obo:SO_0000001",
    "dnSequence": "obo:SO_0000352",
    "rnaSequence": "obo:SO_0000233",
    "proteinSequence": "obo:SO_0001217",
    "sequenceString": "sio:SIO_000030",
    "sequenceLength": "sio:SIO_000041",
    "annotation": "sio:SIO_000642",
    "annotationType": "sio:SIO_000098",
    "annotationStart": "sio:SIO_000943",
    "annotationEnd": "sio:SIO_000944",
    "strand": "obo:SO_0000699",

    "notebook": "scispot:Notebook",
    "notebookEntry": "scispot:NotebookEntry",
    "entryType": "scispot:entryType",
    "experiment": "sio:SIO_000070",
    "protocol": "sio:SIO_000701",
    "observation": "sio:SIO_000111",

    "manifest": "scispot:Manifest",
    "manifestType": "scispot:containerType",
    "plate": "obo:OBI_0000929",
    "box": "scispot:StorageBox",
    "rack": "scispot:StorageRack",
    "dimensions": "schema:size",
    "containerRows": "scispot:rows",
    "containerColumns": "scispot:columns",

    "apiKey": "schema:accessCode",
    "workspace": "schema:Organization",

    "fhirObservation": "https://www.hl7.org/fhir/observation.html",
    "hl7MessageType": "scispot:hl7MessageType",
    "astmProtocol": "scispot:astmProtocol",

    "labType": "scispot:labType",
    "biotechLab": "scispot:BiotechLab",
    "clinicalLab": "scispot:ClinicalLab",
    "researchLab": "scispot:ResearchLab"
  }
}