National Center for Biotechnology Information (NCBI) · JSON-LD Context

Ncbi Context

JSON-LD context defining the semantic vocabulary for Ncbi from National Center for Biotechnology Information (NCBI).

49 Classes 3 Properties 6 Namespaces

View Context View on GitHub

Namespaces

ncbi: https://www.ncbi.nlm.nih.gov/vocab/

datasets: https://api.ncbi.nlm.nih.gov/datasets/v2/

eutils: https://eutils.ncbi.nlm.nih.gov/entrez/eutils/

blast: https://blast.ncbi.nlm.nih.gov/blast/Blast.cgi

pubchem: https://pubchem.ncbi.nlm.nih.gov/rest/pug

pmc: https://pmc.ncbi.nlm.nih.gov/

Classes

Organization WebAPI DataCatalog Dataset Gene Taxon ChemicalSubstance MolecularEntity BioChemEntity accession taxId taxon assemblyAccession geneId pubmedId pmcId doi cid sid aid smiles inchi inchiKey eSearch eFetch eSummary eLink eInfo ePost eSpell eCitMatch eGQuery database retmode rettype term apiKey genomeAssembly fastaSequence gff3Annotation sequenceLength chromosomeCount scaffoldCount n50 gcPercent identifier name description url

Properties

Property	Type	Container
provider	reference
documentation	reference
license	reference

JSON-LD Document

{
  "@context": {
    "@vocab": "https://schema.org/",
    "ncbi": "https://www.ncbi.nlm.nih.gov/vocab/",
    "datasets": "https://api.ncbi.nlm.nih.gov/datasets/v2/",
    "eutils": "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/",
    "blast": "https://blast.ncbi.nlm.nih.gov/blast/Blast.cgi",
    "pubchem": "https://pubchem.ncbi.nlm.nih.gov/rest/pug",
    "pmc": "https://pmc.ncbi.nlm.nih.gov/",

    "Organization": "schema:Organization",
    "WebAPI": "schema:WebAPI",
    "DataCatalog": "schema:DataCatalog",
    "Dataset": "schema:Dataset",
    "Gene": "schema:Gene",
    "Taxon": "schema:Taxon",
    "ChemicalSubstance": "schema:ChemicalSubstance",
    "MolecularEntity": "schema:MolecularEntity",
    "BioChemEntity": "schema:BioChemEntity",

    "accession": "ncbi:accession",
    "taxId": "ncbi:taxId",
    "taxon": "ncbi:taxon",
    "assemblyAccession": "ncbi:assemblyAccession",
    "geneId": "ncbi:geneId",
    "pubmedId": "ncbi:pubmedId",
    "pmcId": "ncbi:pmcId",
    "doi": "schema:identifier",
    "cid": "ncbi:compoundId",
    "sid": "ncbi:substanceId",
    "aid": "ncbi:assayId",
    "smiles": "ncbi:smiles",
    "inchi": "ncbi:inchi",
    "inchiKey": "ncbi:inchiKey",

    "eSearch": "eutils:esearch.fcgi",
    "eFetch": "eutils:efetch.fcgi",
    "eSummary": "eutils:esummary.fcgi",
    "eLink": "eutils:elink.fcgi",
    "eInfo": "eutils:einfo.fcgi",
    "ePost": "eutils:epost.fcgi",
    "eSpell": "eutils:espell.fcgi",
    "eCitMatch": "eutils:ecitmatch.cgi",
    "eGQuery": "eutils:egquery.fcgi",

    "database": "ncbi:database",
    "retmode": "ncbi:retmode",
    "rettype": "ncbi:rettype",
    "term": "ncbi:searchTerm",
    "apiKey": "ncbi:apiKey",

    "genomeAssembly": "ncbi:genomeAssembly",
    "fastaSequence": "ncbi:fastaSequence",
    "gff3Annotation": "ncbi:gff3Annotation",
    "sequenceLength": "ncbi:sequenceLength",
    "chromosomeCount": "ncbi:chromosomeCount",
    "scaffoldCount": "ncbi:scaffoldCount",
    "n50": "ncbi:n50",
    "gcPercent": "ncbi:gcPercent",

    "provider": {
      "@id": "schema:provider",
      "@type": "@id"
    },
    "documentation": {
      "@id": "schema:documentation",
      "@type": "@id"
    },
    "license": {
      "@id": "schema:license",
      "@type": "@id"
    },
    "identifier": "schema:identifier",
    "name": "schema:name",
    "description": "schema:description",
    "url": "schema:url"
  }
}