EvolutionaryScale · JSON-LD Context

Evolutionaryscale Context

JSON-LD context defining the semantic vocabulary for Evolutionaryscale from EvolutionaryScale.

0 Classes 5 Properties 6 Namespaces

View Context View on GitHub

Namespaces

es: https://forge.evolutionaryscale.ai/v1/

schema: https://schema.org/

xsd: http://www.w3.org/2001/XMLSchema#

dcterms: http://purl.org/dc/terms/

bio: http://www.bioontology.org/ontology/

uniprot: http://purl.uniprot.org/core/

Properties

Property	Type	Container
ESMProtein
ESMProteinTensor
GenerationConfig
FoldRequest
Model

JSON-LD Document

{
  "@context": {
    "@version": 1.1,
    "@vocab": "https://schema.org/",
    "es": "https://forge.evolutionaryscale.ai/v1/",
    "schema": "https://schema.org/",
    "xsd": "http://www.w3.org/2001/XMLSchema#",
    "dcterms": "http://purl.org/dc/terms/",
    "bio": "http://www.bioontology.org/ontology/",
    "uniprot": "http://purl.uniprot.org/core/",

    "ESMProtein": {
      "@id": "es:ESMProtein",
      "@context": {
        "sequence": { "@id": "es:ESMProtein/sequence", "@type": "xsd:string" },
        "coordinates": { "@id": "es:ESMProtein/coordinates", "@container": "@list" },
        "secondary_structure": { "@id": "es:ESMProtein/secondaryStructure", "@type": "xsd:string" },
        "sasa": { "@id": "es:ESMProtein/sasa", "@container": "@list" },
        "function_annotations": { "@id": "es:ESMProtein/functionAnnotations", "@container": "@list" },
        "plddt": { "@id": "es:ESMProtein/plddt", "@container": "@list" },
        "ptm": { "@id": "es:ESMProtein/ptm", "@type": "xsd:float" }
      }
    },

    "ESMProteinTensor": {
      "@id": "es:ESMProteinTensor",
      "@context": {
        "sequence": { "@id": "es:ESMProteinTensor/sequence", "@container": "@list" },
        "structure": { "@id": "es:ESMProteinTensor/structure", "@container": "@list" },
        "secondary_structure": { "@id": "es:ESMProteinTensor/secondaryStructure", "@container": "@list" },
        "sasa": { "@id": "es:ESMProteinTensor/sasa", "@container": "@list" },
        "function": { "@id": "es:ESMProteinTensor/function", "@container": "@list" }
      }
    },

    "GenerationConfig": {
      "@id": "es:GenerationConfig",
      "@context": {
        "track": { "@id": "es:GenerationConfig/track", "@type": "xsd:string" },
        "num_steps": { "@id": "es:GenerationConfig/numSteps", "@type": "xsd:integer" },
        "temperature": { "@id": "es:GenerationConfig/temperature", "@type": "xsd:float" },
        "top_p": { "@id": "es:GenerationConfig/topP", "@type": "xsd:float" },
        "schedule": { "@id": "es:GenerationConfig/schedule", "@type": "xsd:string" }
      }
    },

    "FoldRequest": {
      "@id": "es:FoldRequest",
      "@context": {
        "model": { "@id": "es:FoldRequest/model", "@type": "xsd:string" },
        "sequence": { "@id": "es:FoldRequest/sequence", "@type": "xsd:string" },
        "msa": { "@id": "es:FoldRequest/msa", "@container": "@list" },
        "num_recycles": { "@id": "es:FoldRequest/numRecycles", "@type": "xsd:integer" }
      }
    },

    "Model": {
      "@id": "es:Model",
      "@context": {
        "id": { "@id": "es:Model/id", "@type": "xsd:string" },
        "family": { "@id": "es:Model/family", "@type": "xsd:string" },
        "parameters": { "@id": "es:Model/parameters", "@type": "xsd:string" },
        "license": { "@id": "es:Model/license", "@type": "xsd:string" }
      }
    }
  }
}